Dca21741.1
Annotation
- 2-exons
- f-1
- sp|Q2QQ28_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g32440#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold21932)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca21741.1 |
1 |
262 |
262 |
39.69 |
262 |
39 |
4e-44
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QQ28_ORYSJ |
219 |
459 |
829 |
29.07 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca21741.1 |
182 |
261 |
262 |
10.68 |
80 |
34 |
7e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
490 |
572 |
1428 |
5.81 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold21932 |
Augustus |
mRNA |
889 |
2042 |
. |
- |
. |
ID=Dca21741.1;Parent=Dca21741 |
| scaffold21932 |
Augustus |
exon |
889 |
1216 |
. |
- |
. |
ID=Dca21741.1.exon1;Parent=Dca21741.1 |
| scaffold21932 |
Augustus |
exon |
1583 |
2042 |
. |
- |
. |
ID=Dca21741.1.exon2;Parent=Dca21741.1 |
