Dca21834.1
Annotation
- 1-exons
- r-1
- sp|B9HXA4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_565467#GO:0008270#1F0P0C
- AT1G09520.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:3071248-3072030 REVERSE LENGTH=260
- Repeat List (scaffold22)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca21834.1 |
21 |
206 |
294 |
24.48 |
186 |
39 |
2e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9HXA4_POPTR |
11 |
173 |
220 |
74.09 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca21834.1 |
21 |
206 |
294 |
23.12 |
186 |
37 |
2e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G09520.1 |
26 |
187 |
260 |
62.3 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold22 |
Augus-PASA |
mRNA |
223987 |
225091 |
. |
+ |
. |
ID=Dca21834.1;Parent=Dca21834 |
| scaffold22 |
Augus-PASA |
exon |
223987 |
225091 |
. |
+ |
. |
ID=Dca21834.1.exon1;Parent=Dca21834.1 |
