Dca22049.1
Annotation
- 4-exons
- f-1
- sp|Q2R1L3_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g38820#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold2216)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22049.1 |
1 |
106 |
121 |
64.46 |
106 |
74 |
3e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|G9FIF2_BETVU |
904 |
1009 |
1553 |
6.82 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22049.1 |
1 |
100 |
121 |
25.61 |
100 |
31 |
1e-10
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
897 |
996 |
1539 |
6.49 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2216 |
Augustus |
mRNA |
27942 |
29377 |
. |
- |
. |
ID=Dca22049.1;Parent=Dca22049 |
| scaffold2216 |
Augustus |
exon |
27942 |
28440 |
. |
- |
. |
ID=Dca22049.1.exon1;Parent=Dca22049.1 |
| scaffold2216 |
Augustus |
exon |
28516 |
28561 |
. |
- |
. |
ID=Dca22049.1.exon2;Parent=Dca22049.1 |
| scaffold2216 |
Augustus |
exon |
28660 |
28927 |
. |
- |
. |
ID=Dca22049.1.exon3;Parent=Dca22049.1 |
| scaffold2216 |
Augustus |
exon |
29036 |
29377 |
. |
- |
. |
ID=Dca22049.1.exon4;Parent=Dca22049.1 |
