Dca22157.1
Annotation
- 4-exons
- f-19
- sp|Q2QRM1_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g27096#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold2224)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22157.1 |
25 |
181 |
654 |
13.45 |
157 |
57 |
1e-44
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRM1_ORYSJ |
1251 |
1405 |
1745 |
8.88 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22157.1 |
537 |
633 |
654 |
5.81 |
97 |
40 |
8e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1284 |
1378 |
1401 |
6.78 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2224 |
Augustus |
mRNA |
89766 |
92166 |
. |
- |
. |
ID=Dca22157.1;Parent=Dca22157 |
| scaffold2224 |
Augustus |
exon |
89766 |
90124 |
. |
- |
. |
ID=Dca22157.1.exon1;Parent=Dca22157.1 |
| scaffold2224 |
Augustus |
exon |
90347 |
90916 |
. |
- |
. |
ID=Dca22157.1.exon2;Parent=Dca22157.1 |
| scaffold2224 |
Augustus |
exon |
91031 |
91463 |
. |
- |
. |
ID=Dca22157.1.exon3;Parent=Dca22157.1 |
| scaffold2224 |
Augustus |
exon |
91564 |
92166 |
. |
- |
. |
ID=Dca22157.1.exon4;Parent=Dca22157.1 |
