Dca22360.1
Annotation
- 3-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold2243)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22360.1 |
80 |
620 |
620 |
54.35 |
541 |
59 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
27 |
600 |
964 |
59.54 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22360.1 |
461 |
620 |
620 |
11.77 |
160 |
46 |
2e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
914 |
1070 |
1428 |
10.99 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2243 |
Augustus |
mRNA |
33923 |
36503 |
. |
+ |
. |
ID=Dca22360.1;Parent=Dca22360 |
| scaffold2243 |
Augustus |
exon |
33923 |
34153 |
. |
+ |
. |
ID=Dca22360.1.exon1;Parent=Dca22360.1 |
| scaffold2243 |
Augustus |
exon |
34795 |
35939 |
. |
+ |
. |
ID=Dca22360.1.exon2;Parent=Dca22360.1 |
| scaffold2243 |
Augustus |
exon |
36017 |
36503 |
. |
+ |
. |
ID=Dca22360.1.exon3;Parent=Dca22360.1 |
