Dca22403.1
Annotation
- 3-exons
- f-1
- sp|Q2R307_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g34050#GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P0C
- Repeat List (scaffold2247)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22403.1 |
1 |
76 |
76 |
77.63 |
76 |
78 |
5e-30
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R307_ORYSJ |
467 |
542 |
927 |
8.19 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22403.1 |
2 |
74 |
76 |
36.84 |
73 |
39 |
2e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
868 |
940 |
1539 |
4.74 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2247 |
Augustus |
mRNA |
96425 |
97233 |
. |
- |
. |
ID=Dca22403.1;Parent=Dca22403 |
| scaffold2247 |
Augustus |
exon |
96425 |
96504 |
. |
- |
. |
ID=Dca22403.1.exon1;Parent=Dca22403.1 |
| scaffold2247 |
Augustus |
exon |
96576 |
96881 |
. |
- |
. |
ID=Dca22403.1.exon2;Parent=Dca22403.1 |
| scaffold2247 |
Augustus |
exon |
97005 |
97233 |
. |
- |
. |
ID=Dca22403.1.exon3;Parent=Dca22403.1 |
