Carnation DB

Dca22445.1

Annotation

8-exons
f-1
sp|B9HM06_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_563805#unknown#0F0P0C
Os12t0102200-01 LisH dimerisation motif domain containing protein.
Repeat List (scaffold225)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca22445.1	1	273	274	79.56	273	77	1e-114
Target_name	Start	End	Length	Cov(%)
sp\|B9HM06_POPTR	1	262	263	99.61

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca22445.1	1	239	274	66.05	239	72	4e-99
Target_name	Start	End	Length	Cov(%)
Os12t0102200-01	1	253	260	97.3

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold225	Augus-PASA	mRNA	139042	143738	.	+	.	ID=Dca22445.1;Parent=Dca22445
scaffold225	Augus-PASA	exon	139042	139128	.	+	.	ID=Dca22445.1.exon1;Parent=Dca22445.1
scaffold225	Augus-PASA	exon	139655	139787	.	+	.	ID=Dca22445.1.exon2;Parent=Dca22445.1
scaffold225	Augus-PASA	exon	141813	141901	.	+	.	ID=Dca22445.1.exon3;Parent=Dca22445.1
scaffold225	Augus-PASA	exon	141996	142118	.	+	.	ID=Dca22445.1.exon4;Parent=Dca22445.1
scaffold225	Augus-PASA	exon	142594	142697	.	+	.	ID=Dca22445.1.exon5;Parent=Dca22445.1
scaffold225	Augus-PASA	exon	142803	142828	.	+	.	ID=Dca22445.1.exon6;Parent=Dca22445.1
scaffold225	Augustus	exon	142912	143125	.	+	.	ID=Dca22445.1.exon7;Parent=Dca22445.1
scaffold225	Augus-PASA	exon	143690	143738	.	+	.	ID=Dca22445.1.exon8;Parent=Dca22445.1