Dca23145.1
Annotation
- 4-exons
- f-1
- sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
- Repeat List (scaffold2308)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca23145.1 |
1 |
37 |
338 |
7.1 |
37 |
65 |
1e-06
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|H2KWP6_ORYSJ |
330 |
366 |
932 |
3.96 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca23145.1 |
216 |
338 |
338 |
12.13 |
123 |
34 |
9e-10
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1184 |
1299 |
1428 |
8.12 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2308 |
Augustus |
mRNA |
12282 |
13873 |
. |
+ |
. |
ID=Dca23145.1;Parent=Dca23145 |
| scaffold2308 |
Augustus |
exon |
12282 |
12397 |
. |
+ |
. |
ID=Dca23145.1.exon1;Parent=Dca23145.1 |
| scaffold2308 |
Augustus |
exon |
12614 |
12918 |
. |
+ |
. |
ID=Dca23145.1.exon2;Parent=Dca23145.1 |
| scaffold2308 |
Augustus |
exon |
13008 |
13285 |
. |
+ |
. |
ID=Dca23145.1.exon3;Parent=Dca23145.1 |
| scaffold2308 |
Augustus |
exon |
13556 |
13873 |
. |
+ |
. |
ID=Dca23145.1.exon4;Parent=Dca23145.1 |
