Dca23149.1
Annotation
- 3-exons
- f-1
- sp|E2DN01_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- sp|Q2QTV1_ORYSJ#Transposable element protein, putative, Retrotrans_gag#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g18420#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold23086)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca23149.1 |
1 |
207 |
443 |
17.83 |
207 |
34 |
8e-26
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|E2DN01_BETVU |
26 |
260 |
1717 |
13.68 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca23149.1 |
325 |
417 |
443 |
7.22 |
93 |
35 |
3e-11
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0292200-01 |
98 |
189 |
192 |
47.91 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold23086 |
Augustus |
mRNA |
4048 |
5746 |
. |
- |
. |
ID=Dca23149.1;Parent=Dca23149 |
| scaffold23086 |
Augustus |
exon |
4048 |
4707 |
. |
- |
. |
ID=Dca23149.1.exon1;Parent=Dca23149.1 |
| scaffold23086 |
Augustus |
exon |
4973 |
5547 |
. |
- |
. |
ID=Dca23149.1.exon2;Parent=Dca23149.1 |
| scaffold23086 |
Augustus |
exon |
5650 |
5746 |
. |
- |
. |
ID=Dca23149.1.exon3;Parent=Dca23149.1 |
