Carnation DB

Dca23971.1

Annotation

7-exons
f-1
sp|F6H555_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0028g01320#GO:0016021;GO:0005634;GO:0006355#0F1P2C
AT2G42780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr2:17801037-17802646 FORWARD LENGTH=293
Repeat List (scaffold2392)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca23971.1	19	199	225	47.55	181	59	9e-58
Target_name	Start	End	Length	Cov(%)
sp\|F6H555_VITVI	69	247	254	70.47

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca23971.1	20	218	225	41.77	199	45	5e-44
Target_name	Start	End	Length	Cov(%)
AT2G42780.1	11	217	293	70.64

seqname	source	feature	start	end	score	strand	frame	group
scaffold2392	Augustus	mRNA	12816	14611	.	+	.	ID=Dca23971.1;Parent=Dca23971
scaffold2392	Augustus	exon	12816	13019	.	+	.	ID=Dca23971.1.exon1;Parent=Dca23971.1
scaffold2392	Augustus	exon	13102	13239	.	+	.	ID=Dca23971.1.exon2;Parent=Dca23971.1
scaffold2392	Augus-PASA	exon	13565	13643	.	+	.	ID=Dca23971.1.exon3;Parent=Dca23971.1
scaffold2392	Augus-PASA	exon	13740	13811	.	+	.	ID=Dca23971.1.exon4;Parent=Dca23971.1
scaffold2392	Augus-PASA	exon	13894	13963	.	+	.	ID=Dca23971.1.exon5;Parent=Dca23971.1
scaffold2392	Augus-PASA	exon	14240	14305	.	+	.	ID=Dca23971.1.exon6;Parent=Dca23971.1
scaffold2392	Augus-PASA	exon	14563	14611	.	+	.	ID=Dca23971.1.exon7;Parent=Dca23971.1