Carnation DB

Dca24027.1

Annotation

8-exons
f-1
sp|D7U817_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_15s0048g02730#GO:0005634;GO:0042254#0F1P1C
sp|D7LKR9_ARALL#Ribosome biogenesis regulatory protein family protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_482805#GO:0005634;GO:0042254#0F1P1C
Repeat List (scaffold24)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca24027.1	13	308	351	56.98	296	68	2e-109
Target_name	Start	End	Length	Cov(%)
sp\|D7U817_VITVI	8	303	327	90.51

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca24027.1	13	312	351	52.99	300	62	1e-105
Target_name	Start	End	Length	Cov(%)
Os04t0685100-01	18	316	331	90.33

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold24	Augus-PASA	mRNA	30121	33200	.	+	.	ID=Dca24027.1;Parent=Dca24027
scaffold24	Augus-PASA	exon	30121	30221	.	+	.	ID=Dca24027.1.exon1;Parent=Dca24027.1
scaffold24	Augus-PASA	exon	30793	30943	.	+	.	ID=Dca24027.1.exon2;Parent=Dca24027.1
scaffold24	Augus-PASA	exon	31544	31595	.	+	.	ID=Dca24027.1.exon3;Parent=Dca24027.1
scaffold24	Augus-PASA	exon	31687	31815	.	+	.	ID=Dca24027.1.exon4;Parent=Dca24027.1
scaffold24	Augus-PASA	exon	31931	32048	.	+	.	ID=Dca24027.1.exon5;Parent=Dca24027.1
scaffold24	Augus-PASA	exon	32443	32626	.	+	.	ID=Dca24027.1.exon6;Parent=Dca24027.1
scaffold24	Augus-PASA	exon	32712	32825	.	+	.	ID=Dca24027.1.exon7;Parent=Dca24027.1
scaffold24	Augus-PASA	exon	32994	33200	.	+	.	ID=Dca24027.1.exon8;Parent=Dca24027.1