Dca24229.1
Annotation
- 3-exons
- f-3
- sp|Q53K55_ORYSJ#Retrotransposon protein, putative, Ty1-copia sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g23750#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold24094)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca24229.1 |
2 |
241 |
241 |
67.21 |
240 |
68 |
3e-98
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53K55_ORYSJ |
312 |
551 |
938 |
25.58 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca24229.1 |
6 |
241 |
241 |
40.24 |
236 |
41 |
2e-49
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
486 |
725 |
1428 |
16.8 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold24094 |
Augustus |
mRNA |
272 |
1718 |
. |
+ |
. |
ID=Dca24229.1;Parent=Dca24229 |
| scaffold24094 |
Augustus |
exon |
272 |
997 |
. |
+ |
. |
ID=Dca24229.1.exon1;Parent=Dca24229.1 |
| scaffold24094 |
Augustus |
exon |
1090 |
1173 |
. |
+ |
. |
ID=Dca24229.1.exon2;Parent=Dca24229.1 |
| scaffold24094 |
Augustus |
exon |
1243 |
1718 |
. |
+ |
. |
ID=Dca24229.1.exon3;Parent=Dca24229.1 |
