Dca24586.1
Annotation
- 2-exons
- f-1
- sp|Q7XDW3_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g31220#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold24439)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca24586.1 |
17 |
369 |
385 |
53.76 |
353 |
59 |
2e-119
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7XDW3_ORYSJ |
920 |
1273 |
1361 |
26.01 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca24586.1 |
303 |
369 |
385 |
7.01 |
67 |
41 |
2e-06
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
445 |
511 |
1262 |
5.3 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold24439 |
Augustus |
mRNA |
104 |
1483 |
. |
- |
. |
ID=Dca24586.1;Parent=Dca24586 |
| scaffold24439 |
Augustus |
exon |
104 |
357 |
. |
- |
. |
ID=Dca24586.1.exon1;Parent=Dca24586.1 |
| scaffold24439 |
Augustus |
exon |
580 |
1483 |
. |
- |
. |
ID=Dca24586.1.exon2;Parent=Dca24586.1 |
