Carnation DB

Dca2596.1

Annotation

7-exons
f-1
sp|B9GXX5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_712227#GO:0003723;GO:0006355#1F1P0C
AT4G26370.1 | Symbols: | antitermination NusB domain-containing protein | chr4:13334099-13336153 REVERSE LENGTH=301
Repeat List (scaffold109)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2596.1	100	287	288	47.22	188	68	5e-77
Target_name	Start	End	Length	Cov(%)
sp\|B9GXX5_POPTR	2	201	218	91.74

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2596.1	91	286	288	45.48	196	63	5e-72
Target_name	Start	End	Length	Cov(%)
AT4G26370.1	76	283	301	69.1

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold109	Augustus	mRNA	258149	260384	.	-	.	ID=Dca2596.1;Parent=Dca2596
scaffold109	Augustus	exon	258149	258238	.	-	.	ID=Dca2596.1.exon1;Parent=Dca2596.1
scaffold109	Augustus	exon	258331	258429	.	-	.	ID=Dca2596.1.exon2;Parent=Dca2596.1
scaffold109	Augustus	exon	258795	258882	.	-	.	ID=Dca2596.1.exon3;Parent=Dca2596.1
scaffold109	Augus-PASA	exon	258971	259025	.	-	.	ID=Dca2596.1.exon4;Parent=Dca2596.1
scaffold109	Augus-PASA	exon	259452	259586	.	-	.	ID=Dca2596.1.exon5;Parent=Dca2596.1
scaffold109	Augus-PASA	exon	259688	259764	.	-	.	ID=Dca2596.1.exon6;Parent=Dca2596.1
scaffold109	Augustus	exon	260062	260384	.	-	.	ID=Dca2596.1.exon7;Parent=Dca2596.1