Carnation DB

Dca26028.1

Annotation

7-exons
f-1
sp|B9H6H8_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_831426#unknown#0F0P0C
sp|B9SCA2_RICCO#Ubiquitin-protein ligase, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1410170#GO:0016874#1F0P0C
Repeat List (scaffold259)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca26028.1	9	224	301	52.15	216	73	3e-87
Target_name	Start	End	Length	Cov(%)
sp\|B9H6H8_POPTR	3	218	228	94.73

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca26028.1	8	231	301	50.16	224	68	3e-85
Target_name	Start	End	Length	Cov(%)
AT5G67140.1	1	224	228	98.24

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold259	Augustus	mRNA	39271	43547	.	-	.	ID=Dca26028.1;Parent=Dca26028
scaffold259	Augustus	exon	39271	39435	.	-	.	ID=Dca26028.1.exon1;Parent=Dca26028.1
scaffold259	Augustus	exon	39772	39825	.	-	.	ID=Dca26028.1.exon2;Parent=Dca26028.1
scaffold259	Augustus	exon	40989	41183	.	-	.	ID=Dca26028.1.exon3;Parent=Dca26028.1
scaffold259	Augus-PASA	exon	41285	41383	.	-	.	ID=Dca26028.1.exon4;Parent=Dca26028.1
scaffold259	Augus-PASA	exon	41952	42087	.	-	.	ID=Dca26028.1.exon5;Parent=Dca26028.1
scaffold259	Augus-PASA	exon	42925	43071	.	-	.	ID=Dca26028.1.exon6;Parent=Dca26028.1
scaffold259	Augus-PASA	exon	43438	43547	.	-	.	ID=Dca26028.1.exon7;Parent=Dca26028.1