Dca26395.1
Annotation
- 2-exons
- f-1
- sp|A5B919_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_002640#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold262)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca26395.1 |
8 |
401 |
411 |
36.98 |
394 |
37 |
1e-63
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5B919_VITVI |
14 |
418 |
1450 |
27.93 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca26395.1 |
10 |
220 |
411 |
16.05 |
211 |
31 |
3e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
13 |
229 |
237 |
91.56 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold262 |
Augustus |
mRNA |
50373 |
51778 |
. |
+ |
. |
ID=Dca26395.1;Parent=Dca26395 |
| scaffold262 |
Augustus |
exon |
50373 |
51573 |
. |
+ |
. |
ID=Dca26395.1.exon1;Parent=Dca26395.1 |
| scaffold262 |
Augustus |
exon |
51744 |
51778 |
. |
+ |
. |
ID=Dca26395.1.exon2;Parent=Dca26395.1 |
