Dca26512.1
Annotation
- 2-exons
- f-1
- sp|Q2RBA0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g02700#GO:0003676#1F0P0C
- Repeat List (scaffold26304)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca26512.1 |
57 |
391 |
392 |
55.1 |
335 |
65 |
3e-122
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2RBA0_ORYSJ |
501 |
834 |
978 |
34.15 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca26512.1 |
85 |
390 |
392 |
31.63 |
306 |
40 |
1e-66
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
104 |
413 |
1262 |
24.56 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold26304 |
Augustus |
mRNA |
81 |
1346 |
. |
- |
. |
ID=Dca26512.1;Parent=Dca26512 |
| scaffold26304 |
Augustus |
exon |
81 |
1007 |
. |
- |
. |
ID=Dca26512.1.exon1;Parent=Dca26512.1 |
| scaffold26304 |
Augustus |
exon |
1095 |
1346 |
. |
- |
. |
ID=Dca26512.1.exon2;Parent=Dca26512.1 |
