Carnation DB

Dca2700.1

Annotation

5-exons
f-1
sp|F6H768_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_16s0098g00940#GO:0005488;GO:0044238#1F1P0C
sp|B9SEK8_RICCO#Plastid-specific 30S ribosomal protein 1, chloroplast, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0969810#GO:0005840;GO:0005488;GO:0044238#1F1P1C
Repeat List (scaffold1095)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2700.1	57	289	289	62.28	233	77	3e-101
Target_name	Start	End	Length	Cov(%)
sp\|F6H768_VITVI	69	298	298	77.18

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2700.1	57	289	289	56.4	233	70	4e-93
Target_name	Start	End	Length	Cov(%)
AT5G24490.1	73	308	308	76.62

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1095	Augus-PASA	mRNA	54024	56025	.	-	.	ID=Dca2700.1;Parent=Dca2700
scaffold1095	Augus-PASA	exon	54024	54151	.	-	.	ID=Dca2700.1.exon1;Parent=Dca2700.1
scaffold1095	Augus-PASA	exon	54319	54427	.	-	.	ID=Dca2700.1.exon2;Parent=Dca2700.1
scaffold1095	Augus-PASA	exon	54511	54771	.	-	.	ID=Dca2700.1.exon3;Parent=Dca2700.1
scaffold1095	Augus-PASA	exon	54859	55002	.	-	.	ID=Dca2700.1.exon4;Parent=Dca2700.1
scaffold1095	Augus-PASA	exon	55798	56025	.	-	.	ID=Dca2700.1.exon5;Parent=Dca2700.1