Carnation DB

Dca27158.1

Annotation

27-exons
f-742
sp|F6GZL6_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0001g08140#unknown#0F0P0C
AT1G27595.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961
Repeat List (scaffold27)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca27158.1	64	1051	1055	52.41	988	53	0
Target_name	Start	End	Length	Cov(%)
sp\|F6GZL6_VITVI	4	1042	1067	97.37

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca27158.1	168	1046	1055	40.85	879	46	0
Target_name	Start	End	Length	Cov(%)
AT1G27595.1	8	936	961	96.67

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold27	Augustus	mRNA	432745	456197	.	-	.	ID=Dca27158.1;Parent=Dca27158
scaffold27	Augustus	exon	432745	432799	.	-	.	ID=Dca27158.1.exon1;Parent=Dca27158.1
scaffold27	Augustus	exon	433238	433341	.	-	.	ID=Dca27158.1.exon2;Parent=Dca27158.1
scaffold27	Augustus	exon	433455	433538	.	-	.	ID=Dca27158.1.exon3;Parent=Dca27158.1
scaffold27	Augustus	exon	433622	433666	.	-	.	ID=Dca27158.1.exon4;Parent=Dca27158.1
scaffold27	Augustus	exon	434336	434407	.	-	.	ID=Dca27158.1.exon5;Parent=Dca27158.1
scaffold27	Augustus	exon	434499	434579	.	-	.	ID=Dca27158.1.exon6;Parent=Dca27158.1
scaffold27	Augustus	exon	435399	435494	.	-	.	ID=Dca27158.1.exon7;Parent=Dca27158.1
scaffold27	Augustus	exon	435667	435741	.	-	.	ID=Dca27158.1.exon8;Parent=Dca27158.1
scaffold27	Augustus	exon	435864	435911	.	-	.	ID=Dca27158.1.exon9;Parent=Dca27158.1
scaffold27	Augustus	exon	436000	436080	.	-	.	ID=Dca27158.1.exon10;Parent=Dca27158.1
scaffold27	Augustus	exon	437065	437127	.	-	.	ID=Dca27158.1.exon11;Parent=Dca27158.1
scaffold27	Augustus	exon	437219	437383	.	-	.	ID=Dca27158.1.exon12;Parent=Dca27158.1
scaffold27	Augustus	exon	438889	439014	.	-	.	ID=Dca27158.1.exon13;Parent=Dca27158.1
scaffold27	Augustus	exon	439235	439282	.	-	.	ID=Dca27158.1.exon14;Parent=Dca27158.1
scaffold27	Augustus	exon	440260	440502	.	-	.	ID=Dca27158.1.exon15;Parent=Dca27158.1
scaffold27	Augustus	exon	442067	442180	.	-	.	ID=Dca27158.1.exon16;Parent=Dca27158.1
scaffold27	Augustus	exon	442999	443067	.	-	.	ID=Dca27158.1.exon17;Parent=Dca27158.1
scaffold27	Augustus	exon	444341	444937	.	-	.	ID=Dca27158.1.exon18;Parent=Dca27158.1
scaffold27	Augustus	exon	445033	445614	.	-	.	ID=Dca27158.1.exon19;Parent=Dca27158.1
scaffold27	Augustus	exon	447342	447491	.	-	.	ID=Dca27158.1.exon20;Parent=Dca27158.1
scaffold27	Augustus	exon	449018	449192	.	-	.	ID=Dca27158.1.exon21;Parent=Dca27158.1
scaffold27	Augustus	exon	452728	452829	.	-	.	ID=Dca27158.1.exon22;Parent=Dca27158.1
scaffold27	Augus-PASA	exon	454312	454474	.	-	.	ID=Dca27158.1.exon23;Parent=Dca27158.1
scaffold27	Augus-PASA	exon	454897	454999	.	-	.	ID=Dca27158.1.exon24;Parent=Dca27158.1
scaffold27	Augus-PASA	exon	455477	455569	.	-	.	ID=Dca27158.1.exon25;Parent=Dca27158.1
scaffold27	Augus-PASA	exon	455691	455838	.	-	.	ID=Dca27158.1.exon26;Parent=Dca27158.1
scaffold27	Augus-PASA	exon	455971	456197	.	-	.	ID=Dca27158.1.exon27;Parent=Dca27158.1