Dca27366.1
Annotation
- 2-exons
- f-1
- sp|Q2QSB5_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24690#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold27227)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27366.1 |
1 |
383 |
383 |
56.13 |
383 |
48 |
1e-109
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSB5_ORYSJ |
243 |
688 |
810 |
55.06 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27366.1 |
1 |
79 |
383 |
9.13 |
79 |
45 |
9e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
592 |
670 |
1428 |
5.53 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold27227 |
Augustus |
mRNA |
59 |
1407 |
. |
+ |
. |
ID=Dca27366.1;Parent=Dca27366 |
| scaffold27227 |
Augustus |
exon |
59 |
289 |
. |
+ |
. |
ID=Dca27366.1.exon1;Parent=Dca27366.1 |
| scaffold27227 |
Augustus |
exon |
489 |
1407 |
. |
+ |
. |
ID=Dca27366.1.exon2;Parent=Dca27366.1 |
