Dca27423.1
Annotation
- 3-exons
- f-1
- sp|F6I690_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_15s0046g01530#unknown#0F0P0C
- AT5G41620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648776 FORWARD LENGTH=623
- Repeat List (scaffold273)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27423.1 |
14 |
671 |
672 |
51.48 |
658 |
50 |
1e-163
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|F6I690_VITVI |
1 |
658 |
659 |
99.84 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27423.1 |
53 |
653 |
672 |
36.16 |
601 |
40 |
4e-100
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G41620.1 |
34 |
610 |
623 |
92.61 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold273 |
Augustus |
mRNA |
4690 |
8555 |
. |
+ |
. |
ID=Dca27423.1;Parent=Dca27423 |
| scaffold273 |
Augustus |
exon |
4690 |
5109 |
. |
+ |
. |
ID=Dca27423.1.exon1;Parent=Dca27423.1 |
| scaffold273 |
Augustus |
exon |
5658 |
5783 |
. |
+ |
. |
ID=Dca27423.1.exon2;Parent=Dca27423.1 |
| scaffold273 |
Augustus |
exon |
7083 |
8555 |
. |
+ |
. |
ID=Dca27423.1.exon3;Parent=Dca27423.1 |
