Dca27960.1
Annotation
- 3-exons
- f-1
- sp|Q2QRM1_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g27096#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold2789)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27960.1 |
196 |
653 |
655 |
38.47 |
458 |
51 |
5e-142
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRM1_ORYSJ |
1272 |
1745 |
1745 |
27.16 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27960.1 |
195 |
638 |
655 |
25.03 |
444 |
32 |
1e-66
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
905 |
1409 |
1428 |
35.36 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2789 |
Augustus |
mRNA |
55305 |
59000 |
. |
+ |
. |
ID=Dca27960.1;Parent=Dca27960 |
| scaffold2789 |
Augustus |
exon |
55305 |
55886 |
. |
+ |
. |
ID=Dca27960.1.exon1;Parent=Dca27960.1 |
| scaffold2789 |
Augustus |
exon |
57460 |
58486 |
. |
+ |
. |
ID=Dca27960.1.exon2;Parent=Dca27960.1 |
| scaffold2789 |
Augustus |
exon |
58642 |
59000 |
. |
+ |
. |
ID=Dca27960.1.exon3;Parent=Dca27960.1 |
