Carnation DB

Dca28019.1

Annotation

6-exons
f-1
sp|C6TA24_SOYBN#Putative uncharacterized protein#Glycine max (Soybean) (Glycine hispida)#unknown#unknown#0F0P0C
AT5G44650.1 | Symbols: CEST, AtCEST, Y3IP1 | Encodes a nucleus-encoded thylakoid protein, cooperates with the plastid-encoded Ycf3 protein in photosystem i assembly. Also induces tolerance to multiple environmental stresses and reduces photooxidative damage. | chr5:18013396-18015292 FORWARD LENGTH=280
Repeat List (scaffold2796)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28019.1	103	281	281	48.39	179	76	1e-75
Target_name	Start	End	Length	Cov(%)
sp\|C6TA24_SOYBN	84	261	261	68.19

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28019.1	105	281	281	43.06	177	68	1e-65
Target_name	Start	End	Length	Cov(%)
AT5G44650.1	104	280	280	63.21

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2796	Augus-PASA	mRNA	17664	22977	.	-	.	ID=Dca28019.1;Parent=Dca28019
scaffold2796	Augus-PASA	exon	17664	17753	.	-	.	ID=Dca28019.1.exon1;Parent=Dca28019.1
scaffold2796	Augus-PASA	exon	18232	18399	.	-	.	ID=Dca28019.1.exon2;Parent=Dca28019.1
scaffold2796	Augus-PASA	exon	19814	19894	.	-	.	ID=Dca28019.1.exon3;Parent=Dca28019.1
scaffold2796	Augus-PASA	exon	21238	21351	.	-	.	ID=Dca28019.1.exon4;Parent=Dca28019.1
scaffold2796	Augus-PASA	exon	21936	21980	.	-	.	ID=Dca28019.1.exon5;Parent=Dca28019.1
scaffold2796	Augus-PASA	exon	22630	22977	.	-	.	ID=Dca28019.1.exon6;Parent=Dca28019.1