Carnation DB

Dca28083.1

Annotation

8-exons
f-1
sp|A9PFA8_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_827713#GO:0008097;GO:0003735;GO:0006412#2F1P0C
AT3G25520.1 | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal protein L5 | chr3:9269573-9271327 REVERSE LENGTH=301
Repeat List (scaffold28)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28083.1	1	298	302	86.09	298	88	5e-152
Target_name	Start	End	Length	Cov(%)
sp\|A9PFA8_POPTR	2	297	297	99.66

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28083.1	1	291	302	79.47	291	83	3e-144
Target_name	Start	End	Length	Cov(%)
AT3G25520.1	2	292	301	96.67

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold28	Augus-PASA	mRNA	322306	324099	.	-	.	ID=Dca28083.1;Parent=Dca28083
scaffold28	Augus-PASA	exon	322306	322423	.	-	.	ID=Dca28083.1.exon1;Parent=Dca28083.1
scaffold28	Augus-PASA	exon	322616	322785	.	-	.	ID=Dca28083.1.exon2;Parent=Dca28083.1
scaffold28	Augus-PASA	exon	322896	323030	.	-	.	ID=Dca28083.1.exon3;Parent=Dca28083.1
scaffold28	Augus-PASA	exon	323158	323274	.	-	.	ID=Dca28083.1.exon4;Parent=Dca28083.1
scaffold28	Augus-PASA	exon	323348	323427	.	-	.	ID=Dca28083.1.exon5;Parent=Dca28083.1
scaffold28	Augus-PASA	exon	323507	323633	.	-	.	ID=Dca28083.1.exon6;Parent=Dca28083.1
scaffold28	Augus-PASA	exon	323854	323945	.	-	.	ID=Dca28083.1.exon7;Parent=Dca28083.1
scaffold28	Augustus	exon	324030	324099	.	-	.	ID=Dca28083.1.exon8;Parent=Dca28083.1