Carnation DB

Dca28125.1

Annotation

6-exons
f-1
sp|F6HUU8_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_14s0066g00480#GO:0003676;GO:0000166#2F0P0C
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:16225483-16227423 FORWARD LENGTH=423
Repeat List (scaffold2800)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28125.1	15	327	388	54.89	313	66	7e-97
Target_name	Start	End	Length	Cov(%)
sp\|F6HUU8_VITVI	10	322	376	83.24

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28125.1	12	227	388	39.17	216	71	6e-86
Target_name	Start	End	Length	Cov(%)
AT5G40490.1	12	228	423	51.3

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2800	Augus-PASA	mRNA	14282	18058	.	-	.	ID=Dca28125.1;Parent=Dca28125
scaffold2800	Augus-PASA	exon	14282	14851	.	-	.	ID=Dca28125.1.exon1;Parent=Dca28125.1
scaffold2800	Augus-PASA	exon	15183	15352	.	-	.	ID=Dca28125.1.exon2;Parent=Dca28125.1
scaffold2800	Augus-PASA	exon	15451	15550	.	-	.	ID=Dca28125.1.exon3;Parent=Dca28125.1
scaffold2800	Augus-PASA	exon	16571	16734	.	-	.	ID=Dca28125.1.exon4;Parent=Dca28125.1
scaffold2800	Augus-PASA	exon	16826	16866	.	-	.	ID=Dca28125.1.exon5;Parent=Dca28125.1
scaffold2800	Augus-PASA	exon	17937	18058	.	-	.	ID=Dca28125.1.exon6;Parent=Dca28125.1