Carnation DB

Dca28136.1

Annotation

9-exons
f-1
sp|B9HHS7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_820421#GO:0030132;GO:0030130;GO:0005488;GO:0005198;GO:0006886;GO:0016192#2F2P2C
AT3G11130.1 | Symbols: | Clathrin, heavy chain | chr3:3482575-3491667 REVERSE LENGTH=1705
Repeat List (scaffold2802)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28136.1	252	314	314	17.51	63	88	2e-24
Target_name	Start	End	Length	Cov(%)
sp\|B9HHS7_POPTR	189	251	1700	3.7

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28136.1	252	314	314	16.56	63	83	2e-24
Target_name	Start	End	Length	Cov(%)
AT3G11130.1	189	251	1705	3.69

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2802	Augustus	mRNA	191	2974	.	-	.	ID=Dca28136.1;Parent=Dca28136
scaffold2802	Augustus	exon	191	299	.	-	.	ID=Dca28136.1.exon1;Parent=Dca28136.1
scaffold2802	Augustus	exon	405	484	.	-	.	ID=Dca28136.1.exon2;Parent=Dca28136.1
scaffold2802	Augustus	exon	839	947	.	-	.	ID=Dca28136.1.exon3;Parent=Dca28136.1
scaffold2802	Augustus	exon	1039	1137	.	-	.	ID=Dca28136.1.exon4;Parent=Dca28136.1
scaffold2802	Augustus	exon	1586	1713	.	-	.	ID=Dca28136.1.exon5;Parent=Dca28136.1
scaffold2802	Augustus	exon	1817	1895	.	-	.	ID=Dca28136.1.exon6;Parent=Dca28136.1
scaffold2802	Augus-PASA	exon	2034	2122	.	-	.	ID=Dca28136.1.exon7;Parent=Dca28136.1
scaffold2802	Augus-PASA	exon	2491	2695	.	-	.	ID=Dca28136.1.exon8;Parent=Dca28136.1
scaffold2802	Augus-PASA	exon	2930	2974	.	-	.	ID=Dca28136.1.exon9;Parent=Dca28136.1