Carnation DB

Dca28343.1

Annotation

5-exons
f-1
sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
Repeat List (scaffold2822)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28343.1	1	397	528	45.07	397	58	3e-142
Target_name	Start	End	Length	Cov(%)
sp\|O81506_ARATH	45	449	964	42.01

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28343.1	29	335	528	23.1	307	39	1e-59
Target_name	Start	End	Length	Cov(%)
Os08t0125300-01	484	801	1428	22.26

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2822	Augustus	mRNA	90489	96953	.	+	.	ID=Dca28343.1;Parent=Dca28343
scaffold2822	Augustus	exon	90489	91680	.	+	.	ID=Dca28343.1.exon1;Parent=Dca28343.1
scaffold2822	Augustus	exon	95204	95309	.	+	.	ID=Dca28343.1.exon2;Parent=Dca28343.1
scaffold2822	Augustus	exon	95903	96052	.	+	.	ID=Dca28343.1.exon3;Parent=Dca28343.1
scaffold2822	Augustus	exon	96369	96433	.	+	.	ID=Dca28343.1.exon4;Parent=Dca28343.1
scaffold2822	Augustus	exon	96880	96953	.	+	.	ID=Dca28343.1.exon5;Parent=Dca28343.1