Carnation DB

Dca28415.1

Annotation

7-exons
f-1
sp|G7K556_MEDTR#Putative uncharacterized protein#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_5g007360#unknown#0F0P0C
AT1G65020.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:24154523-24156511 REVERSE LENGTH=319
Repeat List (scaffold283)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28415.1	1	334	334	58.98	334	59	6e-115
Target_name	Start	End	Length	Cov(%)
sp\|G7K556_MEDTR	1	322	322	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28415.1	1	323	334	59.58	323	62	4e-111
Target_name	Start	End	Length	Cov(%)
AT1G65020.1	1	308	319	96.55

seqname	source	feature	start	end	score	strand	frame	group
scaffold283	Augus-PASA	mRNA	106146	112184	.	-	.	ID=Dca28415.1;Parent=Dca28415
scaffold283	Augus-PASA	exon	106146	106327	.	-	.	ID=Dca28415.1.exon1;Parent=Dca28415.1
scaffold283	Augus-PASA	exon	106937	107079	.	-	.	ID=Dca28415.1.exon2;Parent=Dca28415.1
scaffold283	Augus-PASA	exon	107413	107601	.	-	.	ID=Dca28415.1.exon3;Parent=Dca28415.1
scaffold283	Augus-PASA	exon	108692	108807	.	-	.	ID=Dca28415.1.exon4;Parent=Dca28415.1
scaffold283	Augus-PASA	exon	108939	109053	.	-	.	ID=Dca28415.1.exon5;Parent=Dca28415.1
scaffold283	Augus-PASA	exon	111720	111857	.	-	.	ID=Dca28415.1.exon6;Parent=Dca28415.1
scaffold283	Augus-PASA	exon	112063	112184	.	-	.	ID=Dca28415.1.exon7;Parent=Dca28415.1