Dca28454.1
Annotation
- 3-exons
- f-1
- sp|Q9M1N9_ARATH#Putative uncharacterized protein T18B22.50#Arabidopsis thaliana (Mouse-ear cress)#Name=T18B22.50#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- sp|O64473_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g19100#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold2834)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca28454.1 |
129 |
229 |
230 |
23.91 |
101 |
55 |
3e-28
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9M1N9_ARATH |
9 |
109 |
762 |
13.25 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca28454.1 |
122 |
216 |
230 |
17.82 |
95 |
44 |
7e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G43760.1 |
527 |
621 |
626 |
15.17 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2834 |
Augustus |
mRNA |
85 |
4190 |
. |
- |
. |
ID=Dca28454.1;Parent=Dca28454 |
| scaffold2834 |
Augustus |
exon |
85 |
494 |
. |
- |
. |
ID=Dca28454.1.exon1;Parent=Dca28454.1 |
| scaffold2834 |
Augustus |
exon |
2062 |
2170 |
. |
- |
. |
ID=Dca28454.1.exon2;Parent=Dca28454.1 |
| scaffold2834 |
Augustus |
exon |
4017 |
4190 |
. |
- |
. |
ID=Dca28454.1.exon3;Parent=Dca28454.1 |
