Carnation DB

Dca29542.1

Annotation

6-exons
f-1
sp|E0CVR6_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_10s0116g01560#GO:0005622;GO:0006396#0F1P1C
AT4G28200.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr4:13987808-13990422 REVERSE LENGTH=648
Repeat List (scaffold2947)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca29542.1	1	648	650	54.61	648	55	0
Target_name	Start	End	Length	Cov(%)
sp\|E0CVR6_VITVI	1	650	652	99.69

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca29542.1	1	642	650	49.69	642	50	0
Target_name	Start	End	Length	Cov(%)
AT4G28200.1	1	644	648	99.38

seqname	source	feature	start	end	score	strand	frame	group
scaffold2947	Augustus	mRNA	14211	22171	.	+	.	ID=Dca29542.1;Parent=Dca29542
scaffold2947	Augustus	exon	14211	14618	.	+	.	ID=Dca29542.1.exon1;Parent=Dca29542.1
scaffold2947	Augustus	exon	17023	17670	.	+	.	ID=Dca29542.1.exon2;Parent=Dca29542.1
scaffold2947	Augustus	exon	18698	19153	.	+	.	ID=Dca29542.1.exon3;Parent=Dca29542.1
scaffold2947	Augustus	exon	20078	20250	.	+	.	ID=Dca29542.1.exon4;Parent=Dca29542.1
scaffold2947	Augustus	exon	21720	21894	.	+	.	ID=Dca29542.1.exon5;Parent=Dca29542.1
scaffold2947	Augustus	exon	22079	22171	.	+	.	ID=Dca29542.1.exon6;Parent=Dca29542.1