Carnation DB

Dca30005.1

Annotation

9-exons
f-1
sp|F6H692_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_03s0091g01190#unknown#0F0P0C
sp|B9HN14_POPTR#Magnesium transporter#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_202135#unknown#0F0P0C
Repeat List (scaffold3)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30005.1	3	478	582	58.93	476	71	0
Target_name	Start	End	Length	Cov(%)
sp\|F6H692_VITVI	16	500	501	96.8

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30005.1	30	478	582	50.17	449	65	7e-153
Target_name	Start	End	Length	Cov(%)
AT3G19640.1	47	483	484	90.28

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3	Augustus	mRNA	342861	347373	.	-	.	ID=Dca30005.1;Parent=Dca30005
scaffold3	Augustus	exon	342861	342995	.	-	.	ID=Dca30005.1.exon1;Parent=Dca30005.1
scaffold3	Augustus	exon	343085	343131	.	-	.	ID=Dca30005.1.exon2;Parent=Dca30005.1
scaffold3	Augustus	exon	343210	343398	.	-	.	ID=Dca30005.1.exon3;Parent=Dca30005.1
scaffold3	Augustus	exon	344265	344490	.	-	.	ID=Dca30005.1.exon4;Parent=Dca30005.1
scaffold3	Augus-PASA	exon	344589	344820	.	-	.	ID=Dca30005.1.exon5;Parent=Dca30005.1
scaffold3	Augus-PASA	exon	344928	345088	.	-	.	ID=Dca30005.1.exon6;Parent=Dca30005.1
scaffold3	Augus-PASA	exon	345299	345427	.	-	.	ID=Dca30005.1.exon7;Parent=Dca30005.1
scaffold3	Augus-PASA	exon	345551	345799	.	-	.	ID=Dca30005.1.exon8;Parent=Dca30005.1
scaffold3	Augus-PASA	exon	346993	347373	.	-	.	ID=Dca30005.1.exon9;Parent=Dca30005.1