Carnation DB

Dca30031.1

Annotation

9-exons
f-1
sp|B9IJ61_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_577294#GO:0043565;GO:0003700;GO:0008270#3F0P0C
sp|G7JV51_MEDTR#GATA transcription factor#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_4g093730#GO:0043565;GO:0003700;GO:0008270#3F0P0C
Repeat List (scaffold3)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30031.1	1	328	330	51.21	328	50	1e-76
Target_name	Start	End	Length	Cov(%)
sp\|B9IJ61_POPTR	1	334	368	90.76

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30031.1	77	249	330	30.3	173	54	6e-49
Target_name	Start	End	Length	Cov(%)
AT3G21175.1	79	261	297	61.61

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3	Augustus	mRNA	576266	581522	.	-	.	ID=Dca30031.1;Parent=Dca30031
scaffold3	Augustus	exon	576266	576340	.	-	.	ID=Dca30031.1.exon1;Parent=Dca30031.1
scaffold3	Augus-PASA	exon	577320	577388	.	-	.	ID=Dca30031.1.exon2;Parent=Dca30031.1
scaffold3	Augus-PASA	exon	577814	577882	.	-	.	ID=Dca30031.1.exon3;Parent=Dca30031.1
scaffold3	Augus-PASA	exon	578182	578238	.	-	.	ID=Dca30031.1.exon4;Parent=Dca30031.1
scaffold3	Augus-PASA	exon	578327	578441	.	-	.	ID=Dca30031.1.exon5;Parent=Dca30031.1
scaffold3	Augus-PASA	exon	578577	578678	.	-	.	ID=Dca30031.1.exon6;Parent=Dca30031.1
scaffold3	Augus-PASA	exon	580089	580222	.	-	.	ID=Dca30031.1.exon7;Parent=Dca30031.1
scaffold3	Augus-PASA	exon	580316	580399	.	-	.	ID=Dca30031.1.exon8;Parent=Dca30031.1
scaffold3	Augus-PASA	exon	581235	581522	.	-	.	ID=Dca30031.1.exon9;Parent=Dca30031.1