Dca30066.1
Annotation
- 3-exons
- f-1
- sp|B9SR01_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_0615680#unknown#0F0P0C
- AT2G41990.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1); Has 172 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17527396-17528527 FORWARD LENGTH=297
- Repeat List (scaffold3)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30066.1 |
1 |
325 |
326 |
59.5 |
325 |
60 |
3e-99
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9SR01_RICCO |
1 |
312 |
313 |
99.68 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30066.1 |
1 |
324 |
326 |
50.3 |
324 |
50 |
3e-70
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT2G41990.1 |
1 |
296 |
297 |
99.66 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3 |
Augustus |
mRNA |
942140 |
944899 |
. |
- |
. |
ID=Dca30066.1;Parent=Dca30066 |
| scaffold3 |
Augustus |
exon |
942140 |
942442 |
. |
- |
. |
ID=Dca30066.1.exon1;Parent=Dca30066.1 |
| scaffold3 |
Augustus |
exon |
942970 |
943155 |
. |
- |
. |
ID=Dca30066.1.exon2;Parent=Dca30066.1 |
| scaffold3 |
Augustus |
exon |
944408 |
944899 |
. |
- |
. |
ID=Dca30066.1.exon3;Parent=Dca30066.1 |
