Carnation DB

Dca3017.1

Annotation

5-exons
f-1
sp|F6HIH5_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0059g01950#GO:0005488#1F0P0C
AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:883782-885611 FORWARD LENGTH=609
Repeat List (scaffold1105)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3017.1	9	102	339	9.43	94	34	5e-08
Target_name	Start	End	Length	Cov(%)
sp\|F6HIH5_VITVI	58	152	629	15.1

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3017.1	4	98	339	12.68	95	46	1e-18
Target_name	Start	End	Length	Cov(%)
AT1G03540.1	263	357	609	15.59

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1105	Augustus	mRNA	65355	68145	.	-	.	ID=Dca3017.1;Parent=Dca3017
scaffold1105	Augustus	exon	65355	65758	.	-	.	ID=Dca3017.1.exon1;Parent=Dca3017.1
scaffold1105	Augustus	exon	66633	66699	.	-	.	ID=Dca3017.1.exon2;Parent=Dca3017.1
scaffold1105	Augustus	exon	67199	67284	.	-	.	ID=Dca3017.1.exon3;Parent=Dca3017.1
scaffold1105	Augustus	exon	67527	67685	.	-	.	ID=Dca3017.1.exon4;Parent=Dca3017.1
scaffold1105	Augustus	exon	67842	68145	.	-	.	ID=Dca3017.1.exon5;Parent=Dca3017.1