Dca30261.1
Annotation
- 2-exons
- f-1
- sp|Q2RBA0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g02700#GO:0003676#1F0P0C
- Repeat List (scaffold3016)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30261.1 |
18 |
303 |
311 |
59.16 |
286 |
57 |
4e-94
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2RBA0_ORYSJ |
480 |
801 |
978 |
32.92 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30261.1 |
46 |
303 |
311 |
32.47 |
258 |
35 |
8e-47
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
86 |
381 |
1262 |
23.45 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3016 |
Augustus |
mRNA |
19569 |
20602 |
. |
+ |
. |
ID=Dca30261.1;Parent=Dca30261 |
| scaffold3016 |
Augustus |
exon |
19569 |
19817 |
. |
+ |
. |
ID=Dca30261.1.exon1;Parent=Dca30261.1 |
| scaffold3016 |
Augustus |
exon |
19916 |
20602 |
. |
+ |
. |
ID=Dca30261.1.exon2;Parent=Dca30261.1 |
