Dca3048.1
Annotation
- 4-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold1107)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca3048.1 |
224 |
496 |
500 |
35.2 |
273 |
65 |
2e-107
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
54 |
326 |
964 |
28.31 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca3048.1 |
249 |
486 |
500 |
19.6 |
238 |
41 |
2e-52
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
490 |
731 |
1428 |
16.94 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1107 |
Augustus |
mRNA |
8539 |
10668 |
. |
+ |
. |
ID=Dca3048.1;Parent=Dca3048 |
| scaffold1107 |
Augustus |
exon |
8539 |
8700 |
. |
+ |
. |
ID=Dca3048.1.exon1;Parent=Dca3048.1 |
| scaffold1107 |
Augustus |
exon |
8796 |
8941 |
. |
+ |
. |
ID=Dca3048.1.exon2;Parent=Dca3048.1 |
| scaffold1107 |
Augustus |
exon |
9108 |
9460 |
. |
+ |
. |
ID=Dca3048.1.exon3;Parent=Dca3048.1 |
| scaffold1107 |
Augustus |
exon |
9827 |
10668 |
. |
+ |
. |
ID=Dca3048.1.exon4;Parent=Dca3048.1 |
