Carnation DB

Dca30490.1

Annotation

5-exons
f-1
sp|F6GUG3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_06s0004g07710#GO:0009982;GO:0003723;GO:0001522#2F1P0C
AT2G30320.1 | Symbols: | Pseudouridine synthase family protein | chr2:12925728-12927896 REVERSE LENGTH=510
Repeat List (scaffold3045)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30490.1	1	413	424	58.25	413	56	1e-140
Target_name	Start	End	Length	Cov(%)
sp\|F6GUG3_VITVI	67	510	516	86.04

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30490.1	1	407	424	51.65	407	53	4e-123
Target_name	Start	End	Length	Cov(%)
AT2G30320.1	67	481	510	81.37

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3045	Augus-PASA	mRNA	20778	23244	.	-	.	ID=Dca30490.1;Parent=Dca30490
scaffold3045	Augus-PASA	exon	20778	20804	.	-	.	ID=Dca30490.1.exon1;Parent=Dca30490.1
scaffold3045	PASA	exon	21119	21526	.	-	.	ID=Dca30490.1.exon2;Parent=Dca30490.1
scaffold3045	Augustus	exon	21785	22147	.	-	.	ID=Dca30490.1.exon3;Parent=Dca30490.1
scaffold3045	Augustus	exon	22245	22651	.	-	.	ID=Dca30490.1.exon4;Parent=Dca30490.1
scaffold3045	Augustus	exon	23175	23244	.	-	.	ID=Dca30490.1.exon5;Parent=Dca30490.1