Carnation DB

Dca30744.1

Annotation

5-exons
f-1
sp|B9HND5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1087631#unknown#0F0P0C
AT1G07120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | chr1:2184874-2186580 REVERSE LENGTH=392
Repeat List (scaffold3080)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30744.1	2	355	389	50.12	354	54	1e-94
Target_name	Start	End	Length	Cov(%)
sp\|B9HND5_POPTR	4	365	388	93.29

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30744.1	4	355	389	46.27	352	48	9e-85
Target_name	Start	End	Length	Cov(%)
AT1G07120.1	7	369	392	92.6

seqname	source	feature	start	end	score	strand	frame	group
scaffold3080	Augustus	mRNA	40044	42168	.	-	.	ID=Dca30744.1;Parent=Dca30744
scaffold3080	Augustus	exon	40044	40157	.	-	.	ID=Dca30744.1.exon1;Parent=Dca30744.1
scaffold3080	Augustus	exon	40263	40394	.	-	.	ID=Dca30744.1.exon2;Parent=Dca30744.1
scaffold3080	Augustus	exon	40801	40912	.	-	.	ID=Dca30744.1.exon3;Parent=Dca30744.1
scaffold3080	Augustus	exon	41016	41320	.	-	.	ID=Dca30744.1.exon4;Parent=Dca30744.1
scaffold3080	Augustus	exon	41662	42168	.	-	.	ID=Dca30744.1.exon5;Parent=Dca30744.1