Dca31316.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3149)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31316.1 |
6 |
312 |
312 |
37.5 |
307 |
33 |
1e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
138 |
477 |
1050 |
32.38 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31316.1 |
222 |
303 |
312 |
11.21 |
82 |
43 |
8e-14
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
649 |
731 |
1428 |
5.81 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3149 |
Augustus |
mRNA |
8508 |
11483 |
. |
+ |
. |
ID=Dca31316.1;Parent=Dca31316 |
| scaffold3149 |
Augustus |
exon |
8508 |
9177 |
. |
+ |
. |
ID=Dca31316.1.exon1;Parent=Dca31316.1 |
| scaffold3149 |
Augustus |
exon |
9279 |
9309 |
. |
+ |
. |
ID=Dca31316.1.exon2;Parent=Dca31316.1 |
| scaffold3149 |
Augustus |
exon |
11246 |
11483 |
. |
+ |
. |
ID=Dca31316.1.exon3;Parent=Dca31316.1 |
