Dca31322.1
Annotation
- 2-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3149)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31322.1 |
37 |
583 |
636 |
33.8 |
547 |
38 |
5e-93
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
89 |
628 |
1248 |
43.26 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31322.1 |
410 |
586 |
636 |
12.42 |
177 |
45 |
3e-40
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
548 |
725 |
1428 |
12.46 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3149 |
Augustus |
mRNA |
67406 |
69625 |
. |
- |
. |
ID=Dca31322.1;Parent=Dca31322 |
| scaffold3149 |
Augustus |
exon |
67406 |
68097 |
. |
- |
. |
ID=Dca31322.1.exon1;Parent=Dca31322.1 |
| scaffold3149 |
Augustus |
exon |
68407 |
69625 |
. |
- |
. |
ID=Dca31322.1.exon2;Parent=Dca31322.1 |
