Dca3145.1
Annotation
- 2-exons
- f-1
- sp|Q2RBA0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g02700#GO:0003676#1F0P0C
- Repeat List (scaffold11107)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca3145.1 |
1 |
275 |
275 |
66.18 |
275 |
59 |
5e-99
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2RBA0_ORYSJ |
526 |
834 |
978 |
31.59 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca3145.1 |
1 |
274 |
275 |
40.36 |
274 |
36 |
3e-53
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
102 |
413 |
1262 |
24.72 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold11107 |
Augustus |
mRNA |
2013 |
2938 |
. |
- |
. |
ID=Dca3145.1;Parent=Dca3145 |
| scaffold11107 |
Augustus |
exon |
2013 |
2472 |
. |
- |
. |
ID=Dca3145.1.exon1;Parent=Dca3145.1 |
| scaffold11107 |
Augustus |
exon |
2571 |
2938 |
. |
- |
. |
ID=Dca3145.1.exon2;Parent=Dca3145.1 |
