Dca31637.1
Annotation
- 2-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold31923)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31637.1 |
1 |
122 |
123 |
73.98 |
122 |
55 |
4e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
744 |
909 |
1050 |
15.8 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31637.1 |
2 |
120 |
123 |
37.39 |
119 |
30 |
2e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1128 |
1282 |
1428 |
10.85 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold31923 |
Augustus |
mRNA |
502 |
1006 |
. |
+ |
. |
ID=Dca31637.1;Parent=Dca31637 |
| scaffold31923 |
Augustus |
exon |
502 |
638 |
. |
+ |
. |
ID=Dca31637.1.exon1;Parent=Dca31637.1 |
| scaffold31923 |
Augustus |
exon |
772 |
1006 |
. |
+ |
. |
ID=Dca31637.1.exon2;Parent=Dca31637.1 |
