Carnation DB

Dca3228.1

Annotation

8-exons
f-1
sp|D7UDH2_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0122g00410#unknown#0F0P0C
AT1G20970.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:7314338-7319246 FORWARD LENGTH=1364
Repeat List (scaffold1114)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3228.1	705	1158	1160	16.29	454	41	2e-87
Target_name	Start	End	Length	Cov(%)
sp\|D7UDH2_VITVI	905	1359	1477	30.8

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3228.1	701	1151	1160	14.74	451	37	1e-64
Target_name	Start	End	Length	Cov(%)
AT1G20970.1	780	1237	1364	33.57

seqname	source	feature	start	end	score	strand	frame	group
scaffold1114	Augustus	mRNA	89615	93923	.	+	.	ID=Dca3228.1;Parent=Dca3228
scaffold1114	Augustus	exon	89615	90293	.	+	.	ID=Dca3228.1.exon1;Parent=Dca3228.1
scaffold1114	Augustus	exon	90369	91630	.	+	.	ID=Dca3228.1.exon2;Parent=Dca3228.1
scaffold1114	Augustus	exon	91727	92026	.	+	.	ID=Dca3228.1.exon3;Parent=Dca3228.1
scaffold1114	Augustus	exon	92113	92271	.	+	.	ID=Dca3228.1.exon4;Parent=Dca3228.1
scaffold1114	Augustus	exon	92372	92551	.	+	.	ID=Dca3228.1.exon5;Parent=Dca3228.1
scaffold1114	Augustus	exon	92657	92851	.	+	.	ID=Dca3228.1.exon6;Parent=Dca3228.1
scaffold1114	Augustus	exon	93115	93204	.	+	.	ID=Dca3228.1.exon7;Parent=Dca3228.1
scaffold1114	Augustus	exon	93306	93923	.	+	.	ID=Dca3228.1.exon8;Parent=Dca3228.1