Carnation DB

Dca32545.1

Annotation

6-exons
f-1
sp|D7MDA7_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_491904#unknown#0F0P0C
AT4G28590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125367-14126828 REVERSE LENGTH=331
Repeat List (scaffold33)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32545.1	71	372	379	44.59	302	54	8e-83
Target_name	Start	End	Length	Cov(%)
sp\|D7MDA7_ARALL	51	327	336	82.44

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32545.1	34	372	379	46.43	339	50	3e-83
Target_name	Start	End	Length	Cov(%)
AT4G28590.1	11	322	331	94.25

seqname	source	feature	start	end	score	strand	frame	group
scaffold33	Augustus	mRNA	340636	343430	.	+	.	ID=Dca32545.1;Parent=Dca32545
scaffold33	Augustus	exon	340636	341516	.	+	.	ID=Dca32545.1.exon1;Parent=Dca32545.1
scaffold33	Augustus	exon	341937	341985	.	+	.	ID=Dca32545.1.exon2;Parent=Dca32545.1
scaffold33	Augustus	exon	342326	342437	.	+	.	ID=Dca32545.1.exon3;Parent=Dca32545.1
scaffold33	Augustus	exon	342732	342828	.	+	.	ID=Dca32545.1.exon4;Parent=Dca32545.1
scaffold33	Augustus	exon	342929	342942	.	+	.	ID=Dca32545.1.exon5;Parent=Dca32545.1
scaffold33	Augustus	exon	343315	343430	.	+	.	ID=Dca32545.1.exon6;Parent=Dca32545.1