Carnation DB

Dca32547.1

Annotation

8-exons
f-1
sp|D7MDA7_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_491904#unknown#0F0P0C
AT4G28590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125367-14126828 REVERSE LENGTH=331
Repeat List (scaffold33)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32547.1	83	365	372	43.01	283	52	7e-80
Target_name	Start	End	Length	Cov(%)
sp\|D7MDA7_ARALL	51	327	336	82.44

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32547.1	95	365	372	40.59	271	51	3e-79
Target_name	Start	End	Length	Cov(%)
AT4G28590.1	51	322	331	82.17

seqname	source	feature	start	end	score	strand	frame	group
scaffold33	Augustus	mRNA	363104	367209	.	+	.	ID=Dca32547.1;Parent=Dca32547
scaffold33	Augustus	exon	363104	363114	.	+	.	ID=Dca32547.1.exon1;Parent=Dca32547.1
scaffold33	Augustus	exon	363230	363434	.	+	.	ID=Dca32547.1.exon2;Parent=Dca32547.1
scaffold33	Augustus	exon	365500	365826	.	+	.	ID=Dca32547.1.exon3;Parent=Dca32547.1
scaffold33	Augustus	exon	365911	366152	.	+	.	ID=Dca32547.1.exon4;Parent=Dca32547.1
scaffold33	Augustus	exon	366313	366387	.	+	.	ID=Dca32547.1.exon5;Parent=Dca32547.1
scaffold33	Augustus	exon	366505	366553	.	+	.	ID=Dca32547.1.exon6;Parent=Dca32547.1
scaffold33	Augustus	exon	366698	366809	.	+	.	ID=Dca32547.1.exon7;Parent=Dca32547.1
scaffold33	Augustus	exon	367112	367209	.	+	.	ID=Dca32547.1.exon8;Parent=Dca32547.1