Carnation DB

Dca32940.1

Annotation

5-exons
f-1
sp|A9PGI1_POPTR#Putative uncharacterized protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#unknown#unknown#0F0P0C
Repeat List (scaffold3345)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32940.1	70	226	227	44.49	157	65	2e-58
Target_name	Start	End	Length	Cov(%)
sp\|A9PGI1_POPTR	27	183	192	81.77

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32940.1	76	219	227	36.56	144	46	2e-40
Target_name	Start	End	Length	Cov(%)
AT2G20390.2	27	207	219	82.64

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3345	Augus-PASA	mRNA	26224	32218	.	+	.	ID=Dca32940.1;Parent=Dca32940
scaffold3345	Augus-PASA	exon	26224	26308	.	+	.	ID=Dca32940.1.exon1;Parent=Dca32940.1
scaffold3345	Augus-PASA	exon	26397	26502	.	+	.	ID=Dca32940.1.exon2;Parent=Dca32940.1
scaffold3345	Augus-PASA	exon	29742	29876	.	+	.	ID=Dca32940.1.exon3;Parent=Dca32940.1
scaffold3345	Augus-PASA	exon	31681	31868	.	+	.	ID=Dca32940.1.exon4;Parent=Dca32940.1
scaffold3345	Augus-PASA	exon	32049	32218	.	+	.	ID=Dca32940.1.exon5;Parent=Dca32940.1
scaffold3345	Augus-PASA	mRNA	26224	32218	.	+	.	ID=Dca32940.2;Parent=Dca32940
scaffold3345	Augus-PASA	exon	26224	26308	.	+	.	ID=Dca32940.2.exon1;Parent=Dca32940.2
scaffold3345	Augus-PASA	exon	26397	26502	.	+	.	ID=Dca32940.2.exon2;Parent=Dca32940.2
scaffold3345	Augus-PASA	exon	29739	29876	.	+	.	ID=Dca32940.2.exon3;Parent=Dca32940.2
scaffold3345	Augus-PASA	exon	31681	31868	.	+	.	ID=Dca32940.2.exon4;Parent=Dca32940.2
scaffold3345	Augus-PASA	exon	32049	32218	.	+	.	ID=Dca32940.2.exon5;Parent=Dca32940.2