Carnation DB

Dca33847.1

Annotation

6-exons
f-1
sp|E5GBG5_CUCME#Ty1-copia retrotransposon protein#Cucumis melo subsp melo#unknown#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold347)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33847.1	45	436	436	48.16	392	47	3e-93
Target_name	Start	End	Length	Cov(%)
sp\|E5GBG5_CUCME	88	508	1038	40.55

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33847.1	309	400	436	9.86	92	47	7e-14
Target_name	Start	End	Length	Cov(%)
Os03t0327700-01	2	86	87	97.7

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold347	Augustus	mRNA	86150	88590	.	+	.	ID=Dca33847.1;Parent=Dca33847
scaffold347	Augustus	exon	86150	86196	.	+	.	ID=Dca33847.1.exon1;Parent=Dca33847.1
scaffold347	Augustus	exon	86279	86579	.	+	.	ID=Dca33847.1.exon2;Parent=Dca33847.1
scaffold347	Augustus	exon	86665	87120	.	+	.	ID=Dca33847.1.exon3;Parent=Dca33847.1
scaffold347	Augustus	exon	87183	87687	.	+	.	ID=Dca33847.1.exon4;Parent=Dca33847.1
scaffold347	Augustus	exon	87895	88207	.	+	.	ID=Dca33847.1.exon5;Parent=Dca33847.1
scaffold347	Augustus	exon	88389	88590	.	+	.	ID=Dca33847.1.exon6;Parent=Dca33847.1