Carnation DB

Dca3388.1

Annotation

6-exons
f-1
sp|B9INH2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_736828#GO:0016021;GO:0005787;GO:0008233;GO:0006465#1F1P2C
AT3G05230.1 | Symbols: | Signal peptidase subunit | chr3:1492304-1493452 FORWARD LENGTH=167
Repeat List (scaffold112)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3388.1	1	166	167	61.67	166	63	3e-58
Target_name	Start	End	Length	Cov(%)
sp\|B9INH2_POPTR	1	166	167	99.4

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3388.1	1	166	167	59.88	166	61	2e-56
Target_name	Start	End	Length	Cov(%)
AT3G05230.1	1	166	167	99.4

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold112	Augus-PASA	mRNA	212015	214256	.	+	.	ID=Dca3388.1;Parent=Dca3388
scaffold112	Augus-PASA	exon	212015	212140	.	+	.	ID=Dca3388.1.exon1;Parent=Dca3388.1
scaffold112	Augus-PASA	exon	212227	212274	.	+	.	ID=Dca3388.1.exon2;Parent=Dca3388.1
scaffold112	Augus-PASA	exon	213189	213251	.	+	.	ID=Dca3388.1.exon3;Parent=Dca3388.1
scaffold112	Augus-PASA	exon	213466	213519	.	+	.	ID=Dca3388.1.exon4;Parent=Dca3388.1
scaffold112	Augus-PASA	exon	213846	213932	.	+	.	ID=Dca3388.1.exon5;Parent=Dca3388.1
scaffold112	Augus-PASA	exon	214131	214256	.	+	.	ID=Dca3388.1.exon6;Parent=Dca3388.1