Carnation DB

Dca33980.1

Annotation

6-exons
f-1
sp|A9PDU2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_816374#unknown#0F0P0C
AT4G24380.1 | Symbols: | INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12612554-12613586 FORWARD LENGTH=234
Repeat List (scaffold349)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33980.1	1	220	244	66.39	220	74	2e-91
Target_name	Start	End	Length	Cov(%)
sp\|A9PDU2_POPTR	1	220	220	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33980.1	1	232	244	60.24	232	64	3e-89
Target_name	Start	End	Length	Cov(%)
AT4G24380.1	1	233	234	99.57

seqname	source	feature	start	end	score	strand	frame	group
scaffold349	Augustus	mRNA	75506	79145	.	-	.	ID=Dca33980.1;Parent=Dca33980
scaffold349	Augustus	exon	75506	75645	.	-	.	ID=Dca33980.1.exon1;Parent=Dca33980.1
scaffold349	Augustus	exon	75740	75841	.	-	.	ID=Dca33980.1.exon2;Parent=Dca33980.1
scaffold349	Augustus	exon	76574	76700	.	-	.	ID=Dca33980.1.exon3;Parent=Dca33980.1
scaffold349	Augustus	exon	77069	77110	.	-	.	ID=Dca33980.1.exon4;Parent=Dca33980.1
scaffold349	Augustus	exon	77337	77435	.	-	.	ID=Dca33980.1.exon5;Parent=Dca33980.1
scaffold349	Augustus	exon	78921	79145	.	-	.	ID=Dca33980.1.exon6;Parent=Dca33980.1