Dca34147.1
Annotation
- 3-exons
- f-1
- sp|Q2R4K0_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g28210#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold3509)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34147.1 |
29 |
200 |
205 |
46.82 |
172 |
44 |
5e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R4K0_ORYSJ |
204 |
423 |
423 |
52 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34147.1 |
2 |
103 |
205 |
20.97 |
102 |
31 |
1e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
766 |
904 |
1539 |
9.03 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3509 |
Augustus |
mRNA |
21477 |
22920 |
. |
+ |
. |
ID=Dca34147.1;Parent=Dca34147 |
| scaffold3509 |
Augustus |
exon |
21477 |
21654 |
. |
+ |
. |
ID=Dca34147.1.exon1;Parent=Dca34147.1 |
| scaffold3509 |
Augustus |
exon |
21768 |
21915 |
. |
+ |
. |
ID=Dca34147.1.exon2;Parent=Dca34147.1 |
| scaffold3509 |
Augustus |
exon |
22629 |
22920 |
. |
+ |
. |
ID=Dca34147.1.exon3;Parent=Dca34147.1 |
